Fish Survey - Zooplankton (Pump) - San Francisco Estuary [ds632]

File Geodatabase Feature Class

Open this dataset in BIOS

Tags
Zooplankton, sampling, freshwater, estuarine, Chlorophyll A, crustaceans, temperature, salinity, Eurytemora affinis, Pseudodiaptomus forbesi, Sinocalanus doerrii, Acartiella sinensis, Acartia spp., Limnoithona tetraspina, Neomysis mercedis, Hyperacanthomysis longirostris (Acanthomysis bowmani), Neomysis kadiakensis, calanoid, copepod, cladocerans, rotifers, Suisun Bay, San Pablo Bay, Carquinez Strait, Sacramento River, San Joaquin River, Napa River, California Delta, North Delta, East Delta, California, biota, environment


Summary

The purpose of the Zooplankton Study is to monitor the distribution and abundance of fish food resources in the upper San Francisco Estuary. Zooplankton are important food organisms for larval, juvenile, and small fish, such as delta smelt, longfin smelt, juvenile salmon, striped bass and splittail. The study also detects and monitors zooplankton recently introduced to the estuary and determines their effects on native species. Water Rights Decision 1379 first mandated the monitoring of Neomysis and zooplankton in Suisun Bay and the Sacramento- San Joaquin Delta. Decision 1485 reaffirmed the need to conduct ongoing and future monitoring surveys, as recommended by the California Department of Fish and Game and concurred by the State Water Resources Control Board, concerning food chain relationships and fisheries impacts as they are affected by Central Valley Project and State Water Project operations in the delta and Suisun Marsh. The data is used by various agencies and consultants for water quality evaluations and analysis.

Description

<DIV STYLE="text-align:Left;"><DIV><P><SPAN>The Zooplankton Study has estimated the abundance of zooplankton taxa in the upper San Francisco Estuary, from eastern San Pablo Bay through the eastern Sacramento-San Joaquin Delta and Suisun Marsh, since 1968. From 1968-1971 the mysid Neomysis mercedis was identified and enumerated from macrozooplankton samples, in 1972 sampling gear was added to target smaller zooplankton. Since 1972 three gear types have been used for sampling: 1) a pump for sampling microzooplankton &lt;1.0 mm long, including rotifers, copepod nauplii, and adult copepods of the genus Limnoithona, 2) a modified Clarke-Bumpus (CB) net for sampling mesozooplankton 0.5-3.0 mm long, including cladocerans, copepodids (immature copepods), and adult copepods, and 3) a macrozooplankton net for sampling zooplankton 1-20 mm long, including mysid shrimp. Sampling is conducted once monthly, year round at both fixed stations and floating entrapment zone stations where electrical conductivity meets certain thresholds. The fixed sites were originally chosen to obtain samples from the entire salinity gradient in Suisun Bay, to sample the large Suisun Marsh sloughs, and to provide good spatial coverage of the delta. In 1994, when the sampling effort was reduced, a subset of stations was chosen based on the ability of stations to replicate the long-term trends seen in the complete station set. The floating stations were chosen to provide coverage of the entrapment zone. Seasonal abundance indices are calculated from 1974 through present from 16 core stations that have been sampled consistently since 1974. Winter abundance indices (December, January, and February) are not calculated, since sampling was not historically conducted in winter. The annual seasonal indices are the average catch-per-unit-effort at all core stations during spring (March-May), summer (June-August), and fall (September-November). Catch-per-unit-effort (CPUE) is calculated for each species at each station by dividing the total catch by the volume of water sampled. Various water quality parameters such as temperature, electrical conductivity, turbidity, and chlorophyll-a are measured at each station, allowing CPUE data to be analyzed with respect to these environmental conditions. ------------------------------------------------------------ Three tables were included along with the Zooplankton study dataset. These tables include: 1. 2002-2007 CB Presence Absence Data 2. 2002-2007 Mysid Presence Absence Data 3. 2002-2007 Pump Presence Absence Data This Zooplankton study dataset contains data from the 2002-2007 Pump Presence Absence Data table.</SPAN></P></DIV></DIV>

Credits

Use limitations

Disclaimer: The State makes no claims, promises, or guarantees about the accuracy, completeness, reliability, or adequacy of these data and expressly disclaims liability for errors and omissions in these data. No warranty of any kind, implied, expressed, or statutory, including but not limited to the warranties of non-infringement of third party rights, title, merchantability, fitness for a particular purpose, and freedom from computer virus, is given with respect to these data.

Extent

West -122.448366 East -121.379334
North 38.470722 South 37.818293

Scale Range
Maximum (zoomed in) 1:5,000
Minimum (zoomed out) 1:150,000,000

ArcGIS Metadata

Topics and Keywords

Themes or categories of the resource biota, environment


Content type Downloadable Data


Place keywords Suisun Bay, San Pablo Bay, Carquinez Strait, Sacramento River, San Joaquin River, Napa River, California Delta, North Delta, East Delta, California

Theme keywords Zooplankton, sampling, freshwater, estuarine, Chlorophyll A, crustaceans, temperature, salinity, Eurytemora affinis, Pseudodiaptomus forbesi, Sinocalanus doerrii, Acartiella sinensis, Acartia spp., Limnoithona tetraspina, Neomysis mercedis, Hyperacanthomysis longirostris (Acanthomysis bowmani), Neomysis kadiakensis, calanoid, copepod, cladocerans, rotifers

Theme keywords biota, environment

Thesaurus
Title ISO 19115 Topic Category




Citation

Title Fish Survey - Zooplankton (Pump) - San Francisco Estuary [ds632]


Presentation formats digital map
FGDC geospatial presentation format vector digital data


Resource Details

Dataset languages English(UNITED STATES)


Status under development
Spatial representation type vector


Processing environment Microsoft Windows Vista Version 6.1 (Build 7601) Service Pack 1; ESRI ArcCatalog 9.3.1.4095


ArcGIS item properties
Name ds632
Location file://\\geodata.\\ds600-699\632-Fish_Survey_Zooplankton_(Pump)_San_Francisco_Estuary\v1\v1_final\ds632.gdb
Access protocol Local Area Network

Extents

Extent
Geographic extent
Bounding rectangle
West longitude -122.448366
East longitude -121.379334
North latitude 38.470722
South latitude 37.818293
Extent contains the resource Yes

Extent
Description
ground condition
Temporal extent
Beginning date 1968
Ending date
Indeterminate date now

Extent
Geographic extent
Bounding rectangle
Extent type Extent used for searching
* West longitude -122.448366
* East longitude -121.379334
* North latitude 38.470722
* South latitude 37.818293
* Extent contains the resource Yes

Extent in the item's coordinate system
* West longitude -213389.937500
* East longitude -121227.468700
* South latitude -19286.980500
* North latitude 51397.660200
* Extent contains the resource Yes

Resource Points of Contact

Point of contact
Individual's name April Hennessy
Organization's name California Department of Fish and Game, Bay-Delta Region
Contact's position Biologist
Contact's role point of contact


Contact information
Phone
Voice (209) 948-7800
Fax (209) 946-6355 (??)

Address
Type both
Delivery point 4001 N. Wilson Way
City Stockton
Administrative area CA
Postal code 95205
Country US
e-mail address ahennessy@dfg.ca.gov



Resource Maintenance

Resource maintenance
Update frequency annually


Resource Constraints

Constraints
Limitations of use

Disclaimer: The State makes no claims, promises, or guarantees about the accuracy, completeness, reliability, or adequacy of these data and expressly disclaims liability for errors and omissions in these data. No warranty of any kind, implied, expressed, or statutory, including but not limited to the warranties of non-infringement of third party rights, title, merchantability, fitness for a particular purpose, and freedom from computer virus, is given with respect to these data.


Legal constraints
Access constraints other restrictions


Other constraints
DFG internal use only.

Spatial Reference

ArcGIS coordinate system
Type Projected
Geographic coordinate reference GCS_North_American_1983
Projection NAD_1983_California_Teale_Albers
Coordinate reference details
Projected coordinate system
Well-known identifier 3310
X origin -16909700
Y origin -8597000
XY scale 10000
Z origin -100000
Z scale 10000
M origin -100000
M scale 10000
XY tolerance 0.001
Z tolerance 0.001
M tolerance 0.001
High precision true
Latest well-known identifier 3310
Well-known text PROJCS["NAD_1983_California_Teale_Albers",GEOGCS["GCS_North_American_1983",DATUM["D_North_American_1983",SPHEROID["GRS_1980",6378137.0,298.257222101]],PRIMEM["Greenwich",0.0],UNIT["Degree",0.0174532925199433]],PROJECTION["Albers"],PARAMETER["False_Easting",0.0],PARAMETER["False_Northing",-4000000.0],PARAMETER["Central_Meridian",-120.0],PARAMETER["Standard_Parallel_1",34.0],PARAMETER["Standard_Parallel_2",40.5],PARAMETER["Latitude_Of_Origin",0.0],UNIT["Meter",1.0],AUTHORITY["EPSG",3310]]

Reference system identifier
* Value 3310
* Codespace EPSG
* Version 6.8(9.2.0)


Spatial Data Properties

Vector
* Level of topology for this dataset geometry only


Geometric objects
Feature class name ds632
* Object type point
* Object count 0



ArcGIS Feature Class Properties
Feature class name ds632
* Feature type Simple
* Geometry type Point
* Has topology FALSE
* Feature count 0
* Spatial index TRUE
* Linear referencing FALSE



Data Quality

Lineage

Process step
When the process occurred 2010-02-0807:39:52
Description
Metadata imported. Edited original metadata by adding ISO keywords.


Process contact
Individual's name Nancy Ying
Organization's name California Department of Fish and Game
Contact's role processor


Contact information


Source data
Relationship to the process step used


Source citation
Alternate titles C:\Documents and Settings\nying\Desktop\ZooplanktonStudy.xml








Geoprocessing history

Process
Process name
Date 2023-10-2613:11:24
Tool location c:\program files\arcgis\pro\Resources\ArcToolbox\toolboxes\Conversion Tools.tbx\ExportFeatures
Command issued
Include in lineage when exporting metadata No


Process
Date 2023-11-0717:20:42
Tool location c:\program files\arcgis\pro\Resources\ArcToolbox\toolboxes\Conversion Tools.tbx\FeatureClassToFeatureClass
Command issued
Include in lineage when exporting metadata No


Process
Date 2023-11-0717:21:07
Tool location c:\program files\arcgis\pro\Resources\ArcToolbox\toolboxes\Data Management Tools.tbx\Project
Command issued
Include in lineage when exporting metadata No


Process
Date 2023-11-0717:21:35
Tool location c:\program files\arcgis\pro\Resources\ArcToolbox\toolboxes\Data Management Tools.tbx\Rename
Command issued
Include in lineage when exporting metadata No


Distribution

Distribution format
* Name File Geodatabase Feature Class


Transfer options
Online source
Location https://wildlife.ca.gov/Data/BIOS
Location http://bios.dfg.ca.gov
Function performed information

Fields

Details for object ds632
* Type Feature Class
* Row count 0


Field OBJECTID
* Alias OBJECTID
* Data type OID
* Width 4
* Precision 0
* Scale 0
* Field description
Internal feature number.
* Description source
Esri
* Description of values
Sequential unique whole numbers that are automatically generated.




Field Shape
* Alias Shape
* Data type Geometry
* Width 0
* Precision 0
* Scale 0
Field description
Feature geometry.
Description source
ESRI
Description of values
Coordinates defining the features.




Field STATION
* Alias STATION
* Data type String
* Width 5
* Precision 0
* Scale 0
Field description
A three digit code ascribed to each station within a geographic series (i.e., all stations in the Sacramento River Region are in the 700s).


Field LOCATION
* Alias LOCATION
* Data type String
* Width 55
* Precision 0
* Scale 0
Field description
Short written description of location.


Field LONDD
* Alias LONDD
* Data type Double
* Width 8
* Precision 0
* Scale 0
Field description
Station location Longitude geographic coordinates expressed in Decimal Degrees.


Field LATDD
* Alias LATDD
* Data type Double
* Width 8
* Precision 0
* Scale 0
Field description
Station location Latitude geographic coordinates expressed in Decimal Degrees.




Details for object 2002-2007 Pump Presence Absence Data for GIS Files
Field OID
Field description
Internal feature number.
Description source
ESRI
Description of values
Sequential unique whole numbers that are automatically generated.




Field STATION2
Field description
Station identification number without NZ.


Field LIMNOSINE
Field description
(Limnoithona sinensis), Start Year: 2007


Field LIMNOSPP
Field description
(Limnoithona spp.), Start Year: 1979


Field LIMNOTET
* Number of decimals 11
Field description
(Limnoithona tetraspina), Start Year: 2007


Field OITHDAV
* Number of decimals 11
Field description
(Oithona davisae), Start Year: 1980


Field OITHSIM
Field description
(Oithona similis), Start Year: 1980


Field OITHSPP
Field description
(Oithona spp.), Start Year: 2007


Field HARPACT
Field description
All life stages of harpactacoids, Start Year: 1972


Field LIMNOJUV
Field description
(Limnoithona spp. copepodids), Start Year: 1995


Field OITHJUV
Field description
(Oithona spp. copepodids), Start Year: 1995


Field EURYNAUP
Field description
(Eurytemora spp. nauplii), Start Year: 1989


Field OTHCOPNAUP
Field description
other copepod nauplii, Start Year: 1989


Field PDIAPNAUP
Field description
(Pseudodiaptomus spp. nauplii), Start Year: 2000


Field SINONAUP
Field description
(Sinocalanus doerrii nauplii), Start Year: 1989


Field ASPLANCH
Field description
(Asplanchna spp.), Start Year: 1972


Field KERATELA
Field description
(Keratella spp.), Start Year: 1972


Field OTHROT
Field description
Other rotifers, Start Year: 1972


Field POLYARTH
Field description
(Polyarthra spp.), Start Year: 1972


Field SYNCH
Field description
(Synchaeta spp. (not bicornis)), Start Year: 1972


Field SYNCHBIC
Field description
(Synchaeta bicornis), Start Year: 1972


Field TRICHO
Field description
(Trichocerca spp.), Start Year: 1972


Field SURVEYCODE
Field description
Year, two digit survey number, two digit survey replicate.


Field YEAR
Field description
Year sample collected.


Field SURVEY
Field description
Survey number sample collected within year, 12 surveys per year one per month (usually month collected, sometimes surveys run into end of previous month or beginning of next month).


Field SURVEYREP
* Number of decimals 11




Field SAMPLEDATE
* Number of decimals 11
Field description
Date sample collected.


Field STATION
Field description
Station identification number used by DFG with NZ for Neomysis Zooplankton.
List of values
Value NZ002
Description Carquinez Strait at Glencove Harbor.


Value NZ003
Description Carquinez Strait at Port Costa, light 22.


Value NZ004
Description Carquinez Strait 46 m - 91 m off Ozol pier.


Value NZ005
Description Carquinez Strait at pier E of Marina.


Value NZ020
Description Suisun Bay at Smoke Stacks on west shore.


Value NZ022
Description Suisun Bay 457 m upstrm of light 4.


Value NZ024
Description Suisun Bay bet. last row of ships & light 8.


Value NZ028
Description Grizzly Bay SE of Dolphin near Suisun Slough.


Value NZ030
Description Grizzly Bay bet. lights 9 & 10.


Value NZ032
Description Montezuma Slough 2nd bend from mouth.


Value NZ033
Description Montezuma Slough downstrm of Meins Landing.


Value NZ034
Description Montezuma Slough past abandoned RR.


Value NZ036
Description Suisun Cutoff at Anamesa Slough.


Value NZ038
Description Suisun Bay, channel 500 m off Freeman Is.


Value NZ040
Description Honker Bay 366 m off Wheeler Is & 366 m off north shore.


Value NZ042
Description Suisun Bay at Avon Pier. Should be a core station, replaced by D6 in 1994 (core 1972-1993).


Value NZ044
Description Suisun Bay channel, at lights 11 & 12.


Value NZ046
Description Suisun Bay channel, 457 m upstrm of light 16.


Value NZ048
Description Suisun Bay channel, off Middle Point (upstrm of light 19).


Value NZ050
Description Suisun Bay channel, at lights 24 & 25.


Value NZ052
Description Suisun Bay channel, at Simmons Pt.


Value NZ054
Description Sacramento River at mouth of Mallard Slough, near Chipps Island.


Value NZ056
Description Sacramento River at light 31.


Value NZ058
Description Sacramento River bet. lights 33 & 34.


Value NZ060
Description Sacramento River abover Point Sacramento (bet. Lights 5 & 9).


Value NZ062
Description Sacramento River 183 m upstrm of lights 9 & 10.


Value NZ064
Description Sacramento River at Emmaton (upstrm of lights 13 & 14).


Value NZ066
Description Sacramento River at NE end of Decker Is.


Value NZ068
Description Sacramento River at Rio Vista Coast Guard Sta.


Value NZ069
Description Sacramento River at NW end of Ida Is.


Value NZ070
Description Sacramento River at light 37.


Value NZ071
Description Cache Slough at light 44.


Value NZ072
Description San Joaquin River at light 2.


Value NZ074
Description San Joaquin River at Antioch Ship Canal (bet. lights 7 & 8).


Value NZ076
Description San Joaquin River bet. lights 10 & 11.


Value NZ078
Description San Joaquin River bet. lights 19 & So. shore.


Value NZ080
Description San Joaquin River 549 m upstrm of light 26. Core station, replaced by D16 in 1994 (core 1972-1993).


Value NZ082
Description San Joaquin River 183 m downstrm from light 34.


Value NZ084
Description San Joaquin River 183 m downstrm from light 42.


Value NZ086
Description San Joaquin River at Potato Point (light 53).


Value NZ088
Description San Joaquin River bet. lights 5 & 6.


Value NZ090
Description San Joaquin River bet. lights 21 & 22.


Value NZ092
Description San Joaquin River at Buckley Cover (downstrm from lights 39 & 40).


Value NZ098
Description Middle River 914 m S. of Bacon Is bridge.


Value NZ099
Description Cache Slough at mouth of Shag Slough.


Value NZ100
Description Steamboat slough 5 km upstrm of mouth.


Value NZ101
Description Sac. Ship Channel bet. lights 51 & 52.


Value NZ103
Description Sacramento River at Isleton.


Value NZ104
Description False River 640 m W. of Piper Slough.


Value NZ155
Description Sac. Ship Channel bet. lights 55 & 56.


Value NZ161
Description Sac. Ship Channel bet. lights 61 & 62.


Value NZ165
Description Sac. Ship Channel bet. lights 65 & 66.


Value NZ169
Description Sac. Ship Channel bet. lights 69 & 70.


Value NZ295
Description San Pablo Bay at light 2.


Value NZ300
Description San Pablo Bay at light BW E.


Value NZ305
Description San Pablo Bay bet. lights 9 & 10.


Value NZ310
Description San Pablo Bay bet. lights 11 & 12.


Value NZ325
Description San Pablo Bay at light 15.


Value NZ338
Description Carquinez Strait at light 2.


Value NZ340
Description Napa River 168 m N. of Good Luck Pt.


Value NZ41A
Description San Pablo Bay near mouth of Petaluma River


Value NZC03
Description Sacramento River at Greens Landing.


Value NZC09
Description West Canal 230 m downstream of Clifton Court gate.


Value NZC13
Description So. Fork Mokelumne River.


Value NZD06
Description Suisun Bay at Bulls Head Point near Martinez (east of SP RR bridge), replaced NZ042 in 1994.


Value NZD11
Description Sherman Lake.


Value NZD14
Description Big Break.


Value NZD15
Description San Joaquin River at light 24.


Value NZD16
Description San Joaquin River at Twitchell Island. Core station, replaced NZ080 in 1994 (core 1994-present).


Value NZD19
Description Franks Tract near Russo's Landing.


Value NZD28
Description Old River near Rancho Del Oro, south end of Holland Tract.


Value NZD41
Description San Pablo Bay near Point Pinole.


Value NZEZ2
Description Floating entrapment zone station, taken where bottom EC is approximately 2000S/cm (10%).


Value NZEZ6
Description Floating entrapment zone station, taken where bottom EC is approximately 6000S/cm (10%).


Value NZM01
Description Sacramento River at Ryde.


Value NZM02
Description Georgiana Slough near Isleton.


Value NZM03
Description North Fork Mokelumne River.


Value NZM04
Description Turner Cut at McDonald Island Ferry


Value NZM06
Description Sycamore Slough at mouth.


Value NZM07
Description South Fork Mokelumne River 1.6 km upstream of Terminous.


Value NZM08
Description San Joaquin River between Mandeville Is & Medford Is.


Value NZM09
Description White Slough at Correra Ferry.


Value NZM10
Description Disappointment Slough near Bishop Cut (downstream of Rindge Tract Bridge).


Value NZM12
Description Not a monitoring station, but used as a station number for Mysid special study.


Value NZP02
Description Mokelumne River 1.6 km upstream of fork.


Value NZP04
Description Hog Slough near Thornton.


Value NZP10
Description Middle River at Victoria Canal.


Value NZS42
Description Suisun Slough at mouth of Volanti Slough.




Field CORE
Field description
Stations consistently sampled throughout study period are coded 1 or 2 and are used for long-term trend analysis and comparison between years. Core stations coded "1" can be used for analyzing data 1972-present, core stations coded "1" and "2" can be used for analyzing data 1974-present. Stations coded "0" are not core stations but can be used to analyze data for an individual year.


Field REGION
Field description
General geographic region of station in upper San Francisco Estuary.
List of values
Value CarStrait
Description Carquinez Strait


Value EastDel
Description East Delta*


Value EZ
Description entrapment zone**


Value SacR
Description Sacramento River


Value SJR
Description San Joaquin River


Value SoDel
Description South Delta*


Value SPBay
Description San Pablo Bay


Value SuiBay
Description Suisun Bay


Value SuiMar
Description Suisun Marsh


Value WestDel
Description West Delta*


Value *
Description = delta refers to Sacramento-SanJoaquin River Delta


Value **
Description = entrapment zone refers to the area of the estuary between 2,000-6,000 Scm-1




Field SECCHI
Field description
Secchi disc reading (in centimeters) for water transparency, measured in shade.


Field CHL_A
Field description
Chlorophyll-a concentration (in micrograms per liter) measured as part of EMP discrete water quality monitoring (recorded since March 1976).


Field TEMPERATUR
Field description
Pre-tow surface temperature (in degrees Celsius) reading taken with vertical Sea-Bird CTD profiler.


Field ECSURFACEP
Field description
Pre-tow surface electrical conductivity (in microSiemens per centimeter (Scm-1)) reading taken with vertical Sea-Bird CTD profiler and standardized to 25 degrees C.


Field ECBOTTOMPR
Field description
Pre-tow bottom electrical conductivity (in Scm-1) reading taken (when surface conductivity exceeds 1000 Scm-1) with vertical Sea-Bird CTD profiler and standardized to 25 degrees C (started recording in Feb 1981).




Overview Description
Entity and Attribute Detail Citation
Presence/Absence - If taxon present in sample "1", if absent "0".




Metadata Details

Metadata language English(UNITED STATES)
Metadata character set utf8 - 8 bit UCS Transfer Format


Scope of the data described by the metadata dataset
Scope name * dataset


* Last update 2023-11-07


ArcGIS metadata properties
Metadata format ArcGIS1.0
Standard or profile used to edit metadata FGDC


Created in ArcGIS for the item 2023-11-0717:21:01
Last modified in ArcGIS for the item 2023-11-0717:20:40


Automatic updates
Have been performed Yes
Last update 2023-11-0717:20:40


Metadata Contacts

Metadata contact
Individual's name Erin Gleason
Organization's name California Department of Fish and Game, Bay-Delta Region
Contact's position Biologist (Marine/Fisheries)
Contact's role point of contact


Contact information
Phone
Voice (209) 948-7800
Fax (209) 946-6355

Address
Type both
Delivery point 4001 N. Wilson Way
City Stockton
Administrative area CA
Postal code 95205
Country US
e-mail address egleason@dfg.ca.gov



Thumbnail and Enclosures