Coho Salmon Status Review - Brood Year Sampling [ds483]

SDE Feature Class

Open this dataset in BIOS

Tags
Threatened Species, Noyo River, San Francisco Bay, South of San Fransisco Bay, Ten Mile River, Russian River, Mad River, Salmon, Big River, Sonoma Coastal, Recovery Planning, Mattole River, Klamath River, Presence/absence, Medocino Coastal, SONCC, California, Coho, Gualala River, Northern California, Monterey coastal, Central Coast California, Species Recovery, CCC, Eel River, Endangered Species, Navarro River, biota, Humboldt Coastal, Evolutionary significant unit (ESU), Anadromous, Smith River, Redwood Creek, Marin Coastal, environment, Del Norte coastal


Summary

The purpose of this work is to develop a new historic coho salmon stream list, provide substantiation and documentation, and develop a presence by brood year table between BY1979 and BY2004 for historic coho salmon streams.

Description

November 2009 Release Please note that this dataset was not intended to be used as a distribution. Brood year data are represented by stream and none of the stream linework is intended to represent the upper extent of coho presence. From 2001 through 2006, a statewide coho salmon status investigation was conducted through field and office work. The goal was to assess coho salmon status by changes in both temporal and spatial occupancy rates, and to lay the baseline by which recovery can be measured. For the purposes of this dataset, we use "Presence confirmed/presence not confirmed" instead of "Presence/absence" because almost all data are generated from sampling and not from census work. This dataset was developed through a combination of field surveys and literature reviews, using a standard protocol, to produce a sampling history based on the brood year could be compiled for each stream and for each maternal brood year from 1979 through 2004. Coho salmon presence based on the maternal brood year, rather than the year of observation, provides a tool to assess the three year life history pattern throughout the current stream distribution. A coho salmon presence by brood year table was constructed for maternal brood year in California coastal watersheds included in two NOAA Fisheries designated Evolutionary Significant Units. For the area south of the Oregon Boarder to the Mattole River at the Punta Gorda (SONCC) the table includes maternal brood years 1979 to 2002. For the area south of the Mattole River, between Punta Gorda and Marin County (the northern section of the CCC) the table includes data for maternal brood years 1979 to 2003. And for the southern portion of the CCC, including streams tributary to San Francisco Bay, the table includes data for maternal brood years 1979 to 2004. The Sacramento River basin was excluded from this study. Data from the SONCC and the CCC have been combined in this dataset for ease of use. This work presents a "New Historic Coho Salmon Stream List" (see Revised Historic Coho Salmon Stream List below). A presence by brood year table was compiled for all streams for which coho salmon presence could be documented in any year. One record per stream for each year in the period of record, brood year 1979 through 2004 is provided. An "x" in the [presence] field is used to indicate documented coho presence prior to 1979 (i.e. <1979). New Historic Coho Salmon Stream List Available literature and the data resulting from field work to develop a new historic coho salmon stream list (identified in this dataset by a "Yes" value in the field [Jong _list]). Streams were included in this list only if sampling conducted on that stream detected presence of coho salmon. Presence is defined as one or more coho salmon detected (the reader is reminded that the presence metric alone does not support inferences to abundance nor habitat quality). Streams were also included in this new list when coho were found to be present by implication (identified in this dataset by a "Yes-Implied" value in the field [Jong _list]). Generally, most sampling occurs in first and second order streams due to access, logistics and feasibility. Higher order streams such as the mainstem Klamath River are a challenge to sample adequately making presence/absence surveys difficult. Often, coho salmon are observed in lower order streams but either no surveys were made in the higher order (down stream) waters or sampling did occur but coho salmon presence was not detected. For example: if coho salmon are found in China Creek (tributary to Redwood Creek thence South Fork Eel River thence Eel River) then coho salmon presence is implied in Redwood Creek, S. F. Eel River and Eel River (in this case, China Creek is the up stream and the down streams are Redwood Creek, S. F. Eel River and Eel River). Coho salmon presence is implied to the "down stream(s)" when coho salmon presence is confirmed in an "up stream." Including streams by implication provides for a more accurate list. A "Null" is assigned to a brood year if sampling did not confirm coho presence and no documentation was found to confirm coho salmon presence for that brood year. If documentation of sampling was found and the presence of coho salmon was not confirmed, a "U" was assigned to that brood year. A "Y" was assigned to a brood year if the presence of coho salmon was confirmed. A "Yi", signifying coho salmon presence by implication, overrides a null or a "U" if a Y" was assigned to an up stream. Revised Historic Coho Salmon Stream List (BM_List) There were a total of 108 streams originally identified as coho streams for which no documentation was found. Based on our work these streams were not included on the new list. These streams are identified in this dataset by a "yes" value in the field [BM_List] and a concurrent "no" value in the field [Jong _list]. Additional detail and documentation is contained in two manuscripts. These are available from the source. Please read the metadata document completely prior to use of this dataset. Examples of appropriate uses include: - Coho salmon recovery planning - Evaluation of future survey sites for coho - Validating coho presence Examples of inappropriate uses include: - Using this dataset as a distribution. - Assuming that coho are present in every year or in all portions of the stream. - Assuming absence of data means that coho are not present in that stream. - Using this data to make parcel or ground level land use management decisions. - Using this dataset to prove or support non-existence of coho at any spatial scale. This dataset was developed through a combination of field surveys and literature reviews. Literature was reviewed, following a standard protocol, so that a sampling history could be compiled for each stream and for each year from 1979 through 2004. Often the author of a document gave poor or no description as to sampling location. In other cases, the document reviewers located the stream but the hydrography linework was not complete. For these and other reasons, some data were omitted here. All users of this data should seek the assistance of qualified professionals such as surveyors, hydrologists, or fishery biologists as needed to ensure that such users possess complete, precise, and up to date information on coho salmon distribution and water body location.

Credits

Bill Jong , Connie Shannon, Doug Burch, Tom Christy CDFG Northern Region

Use limitations

Please read the metadata document completely prior to use of this dataset. Examples of appropriate uses include: - Coho salmon recovery planning - Evaluation of future survey sites for coho - Validating coho presence Examples of inappropriate uses include: - Using this dataset as a distribution. - Assuming that coho are present in every year or in all portions of the stream. - Assuming absence of data means that coho are not present in that stream. - Using this data to make parcel or ground level land use management decisions. - Using this dataset to prove or support non-existence of coho at any spatial scale. This dataset was developed through a combination of field surveys and existing literature reviews. Literature was reviewed, following a standard protocol, so that a sampling history could be compiled for each stream and for each year from 1979 through 2004. Often the author of a document gave poor or no description as to sampling location. In other cases, the document reviewers located the stream but the hydrography linework was not complete. For these and other reasons, some data were omitted here. All users of this data should seek the assistance of qualified professionals such as surveyors, hydrologists, or fishery biologists as needed to ensure that such users possess complete, precise, and up to date information on coho salmon distribution and water body location.

Extent

West -124.390384 East -121.369952
North 42.232764 South 35.857424

Scale Range

ArcGIS Metadata

Topics and Keywords

Themes or categories of the resource environment, planningCadastre, biota


* Content type Downloadable Data


Place keywords Noyo River, San Francisco Bay, South of San Fransisco Bay, Ten Mile River, Russian River, Mad River, Big River, Sonoma Coastal, Mattole River, Klamath River, Medocino Coastal, California, Gualala River, Northern California, Monterey coastal, Central Coast California, Eel River, Navarro River, Humboldt Coastal, Smith River, Redwood Creek, Marin Coastal, Del Norte coastal

Theme keywords Threatened Species, Salmon, Recovery Planning, Presence/absence, SONCC, Coho, Species Recovery, CCC, Endangered Species, Evolutionary significant unit (ESU), Anadromous

Theme keywords biota, environment

Thesaurus
Title ISO 19115 Topic Category




Citation

* Title DS0483_20091229
Publication date 2009-11-01


Presentation formats * digital map


Collection title Coho Status Review Database


Other citation details
Document Review Process excerpt from "Status of Coho Salmon (Oncorhynchus kisutch) in California as Measured by Changes in Temporal and Spatial Historic Occurrence Part I: California Coastal Watersheds North of Punta Gorda" by B. Jong, L. Preston, M. Gilroy, California Department of Fish and Game, 2008. "Each document was reviewed at least twice independently by project-personnel to extract sampling method, location, aquatic species found and other necessary information to build a stream sampling history. When coho salmon occurrence was documented (Presence confirmed), their brood year was calculated based on life stage. Brood year was assigned based on spawning year which is consistent with hatchery designations. For example: adult coho salmon observed spawning in October 2002 would be designated as Brood Year (BY) 2002; the confirmed presence of young-of-the-year (yoy) coho salmon in May 2000 would be designated as BY1999. When a survey did not establish their presence, then Presence not confirmed was assigned; brood year assignment was based on which age class would have been present. For example: a 1998-99 spawner survey only found Chinook salmon then Presence not confirmed was assigned to BY1998; only juvenile steelhead are captured by electrofishing during annual index section sampling during the summer of 2001 would have been assigned a missing BY2000 because yoy coho salmon would have been the age class encountered. Brood year was not assigned if a document reported species-specific data. For example: numerous documents provide single species counts (such as summer-run steelhead); other species could have been encountered but those observations were not included in the written reports. Where possible, project-personnel contacted the researcher, survey participants or otherwise attempted to obtain raw field data sheets and notes to determine if other species were observed."


Citation Contacts

Responsible party
Organization's name Bill Jong, CA Dept of Fish and Game
Contact's role originator


Resource Details

Dataset languages English(UNITED STATES)


Status completed
Spatial representation type * vector


* Processing environment Microsoft Windows 7 Version 6.1 (Build 7601) Service Pack 1; Esri ArcGIS 10.1.1.3143


Credits
Bill Jong , Connie Shannon, Doug Burch, Tom Christy CDFG Northern Region
ArcGIS item properties
* Name DS0483_20091229
* Location Server=; :; Database=; User=; Version=
* Access protocol ArcSDE Connection

Extents

Extent
Description
publication date
Temporal extent
Beginning date 1979-01-01
Ending date 2004-01-01

Extent
Geographic extent
Bounding rectangle
Extent type Extent used for searching
* West longitude -124.390384
* East longitude -121.369952
* North latitude 42.232764
* South latitude 35.857424
* Extent contains the resource Yes

Extent in the item's coordinate system
* West longitude -13847074.254400
* East longitude -13510841.209900
* South latitude 4281020.770000
* North latitude 5195910.457600
* Extent contains the resource Yes

Resource Points of Contact

Point of contact
Individual's name Bill Jong
Organization's name CA Dept. of Fish and Game
Contact's position Fisheries Biologist and principal investigator for the California coho status review
Contact's role point of contact


Contact information
Phone
Voice 530-225-2062
Fax (530) 225-2381

Address
e-mail address BJONG@dfg.ca.gov



Resource Maintenance

Resource maintenance
Update frequency not planned


Resource Constraints

Legal constraints
Limitations of use
Re-distribution of data by permission of California Department of Fish and Game only.
Other constraints
Made available with permission of California Department of Fish and Game, Native Anadromous Fish and Watershed Branch (CDFG/NAFWB). This dataset is made available to the user with the understanding that it shall not be redistributed without the permission of the Department of Fish and Game.
Constraints
Limitations of use
Please read the metadata document completely prior to use of this dataset. Examples of appropriate uses include: - Coho salmon recovery planning - Evaluation of future survey sites for coho - Validating coho presence Examples of inappropriate uses include: - Using this dataset as a distribution. - Assuming that coho are present in every year or in all portions of the stream. - Assuming absence of data means that coho are not present in that stream. - Using this data to make parcel or ground level land use management decisions. - Using this dataset to prove or support non-existence of coho at any spatial scale. This dataset was developed through a combination of field surveys and existing literature reviews. Literature was reviewed, following a standard protocol, so that a sampling history could be compiled for each stream and for each year from 1979 through 2004. Often the author of a document gave poor or no description as to sampling location. In other cases, the document reviewers located the stream but the hydrography linework was not complete. For these and other reasons, some data were omitted here. All users of this data should seek the assistance of qualified professionals such as surveyors, hydrologists, or fishery biologists as needed to ensure that such users possess complete, precise, and up to date information on coho salmon distribution and water body location.

Spatial Reference

ArcGIS coordinate system
* Type Projected
* Geographic coordinate reference GCS_WGS_1984
* Projection WGS_1984_Web_Mercator_Auxiliary_Sphere
* Coordinate reference details
Projected coordinate system
Well-known identifier 102100
X origin -20037700
Y origin -30241100
XY scale 10000
Z origin 0
Z scale 1
M origin -1523061.226978
M scale 10000
XY tolerance 0.001
Z tolerance 2
M tolerance 0.001
High precision true
Latest well-known identifier 3857
Well-known text PROJCS["WGS_1984_Web_Mercator_Auxiliary_Sphere",GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137.0,298.257223563]],PRIMEM["Greenwich",0.0],UNIT["Degree",0.0174532925199433]],PROJECTION["Mercator_Auxiliary_Sphere"],PARAMETER["False_Easting",0.0],PARAMETER["False_Northing",0.0],PARAMETER["Central_Meridian",0.0],PARAMETER["Standard_Parallel_1",0.0],PARAMETER["Auxiliary_Sphere_Type",0.0],UNIT["Meter",1.0],AUTHORITY["EPSG",3857]]

Reference system identifier
* Value 3857
* Codespace EPSG
* Version 7.11.2


Spatial Data Properties

Vector
* Level of topology for this dataset geometry only


Geometric objects
Feature class name DS0483_20091229
* Object type composite
* Object count 969



ArcGIS Feature Class Properties
Feature class name DS0483_20091229
* Feature type Simple
* Geometry type Polyline
* Has topology FALSE
* Feature count 969
* Spatial index TRUE
* Linear referencing TRUE



Data Quality

Scope of quality information
Resource level dataset




Data quality report - Completeness omission
Measure description
Any copy of this dataset is considered to be a snapshot of the dataset at the time of release. It is impingent upon the user to ensure that they have the most recent version prior to making management or planning decisions. 13 streams included in the DFG Coho Stream Research Data extended table could not be located for mapping by the research team thus are not included in this DFG Coho Stream Research spatial representation. 338 brood year records corresponding to these 13 unmapped streams have been assigned the common list order number 9999 in the table. 5 streams included in the DFG Coho Stream Research Data extended table indicate confirmed presence but no date was available to be recorded as positive in the BroodYear field. These 5 streams are attributed as "YesND" in the Jong_List field and are listed below along with comments recorded in the Coho Status Review Database. SONCC 514 Wooliver Creek document does not allow brood year calculation SONCC 615 Jenny Creek No date; no life stage SONCC 616 FALL CREEK No date; no life stage SONCC 1299 DUTCH HENRY CREEK Observed coho just above the mouth, year unknown. SONCC 1383 GUTHRIE CREEK Old California Division of Fish and Game stream survey form; likely pre-dates 1950s; narrative states steelhead and silver salmon present




Data quality report - Quantitative attribute accuracy
Measure description
Available literature and the data resulting from field survey work were used to develop a new historic coho salmon stream list (identified in this dataset by a "Yes" or "Yes-Implied" value in the field [Jong _list]) . Data are presented at the stream level. Each stream is assigned an index 'List_Order' and a unique identifier 'Rec_Order'. Three fields, 'BM_List, 'Researched', and 'Jong_List' are static for each stream and indicate whether documentation for coho presence was established for the stream. Brood year data are presented by year.




Data quality report - Absolute external positional accuracy
Dimension horizontal


Measure description
The display linework is an extraction from a hydrography dataset developed as part of the statewide coho salmon status investigation (Jong, et al, c.2001-2006). The original hydrography dataset was comprised of merged 1:24,000 scale and 1:100,000 scale hydrography. Edits to this merged dataset were made by participants in the project at a scale of 1:24,000 when necessary to include streams not in the original data or to create downstream connectivity. This extraction is a geographical representation of the Coho Streams resulting from the aforementioned investigation.




Lineage

Process step
When the process occurred 2009-11-04
Description
Edited original metadata by adding ISO keywords.


Process contact
Individual's name Greg Ewing
Organization's name California Department of Fish and Game
Contact's role processor


Contact information




Process step
Description
Display linework containing 967 stream records was developed from streams listed in Coho Stream research.


Process contact
Individual's name Connie Shannon
Organization's name PSMFC
Contact's position Fisheries Data Management Specialist
Contact's role processor


Contact information
Phone
Voice 530-225-2155

Address
e-mail address cshannon@dfg.ca.gov





Process step
Description
Metadata were created and approved by Bill Jong prior to publication.




Process step
Description
Excel stream tables containing fields for each brood year was re-formatted to an extended table containing 25,055 brood year records.


Process contact
Individual's name Doug Burch
Organization's name CDFG NR-ERIS
Contact's role processor


Contact information
Phone
Voice (530) 225-2279

Address
e-mail address dburch@dfg.ca.gov





Source data
Source citation
Title Hydrography (100K)


Other citation details
CDFG BIOS dataset, see BIOS metadata for more information.


Resource location online
Location http://imaps.dfg.ca.gov/viewers/biospublic/app.asp





Source data
Source citation
Title Hydrography (24k) - North Coast [ds62]


Other citation details
CDFG BIOS dataset, see BIOS metadata for more information.


Resource location online
Location http://imaps.dfg.ca.gov/viewers/biospublic/app.asp





Geoprocessing history

Process
Date 2009-04-2014:52:31
Tool location C:\Program Files\ArcGIS\ArcToolbox\Toolboxes\Data Management Tools.tbx\Append
Command issued
Include in lineage when exporting metadata No


Process
Date 2009-12-2914:49:25
Tool location C:\Program Files\ArcGIS\ArcToolbox\Toolboxes\Conversion Tools.tbx\FeatureClassToFeatureClass
Command issued
Include in lineage when exporting metadata No


Process
Date 2011-07-2109:02:38
Tool location C:\Program Files\ArcGIS\ArcToolbox\Toolboxes\Conversion Tools.tbx\FeatureClassToFeatureClass
Command issued
Include in lineage when exporting metadata No


Process
Date 2013-06-2115:27:20
Tool location c:\program files (x86)\arcgis\desktop10.1\ArcToolbox\Toolboxes\Data Management Tools.tbx\Project
Command issued
Include in lineage when exporting metadata No


Distribution

Distributor
Contact information
Individual's name Eric Haney
Organization's name CDFG
Contact's position Program Manager for Environmental Resources Information Services
Contact's role distributor


Contact information
Phone
Voice 530-225-2052

Address
e-mail address ehaney@dfg.ca.gov





Distribution format
* Name SDE Feature Class


Transfer options
Online source
Location http://bios.dfg.ca.gov

Fields

Details for object DS0483_20091229
* Row count 969
* Type Feature Class
Definition
Coho Stream List and Brood year data for California
Definition source
Bill Jong


Field OBJECTID
* Alias OBJECTID
* Data type OID
* Width 4
* Precision 10
* Scale 0
* Field description
Internal feature number.
* Description source
ESRI
* Description of values
Sequential unique whole numbers that are automatically generated.




Field Shape
* Alias Shape
* Data type Geometry
* Width 4
* Precision 0
* Scale 0
* Field description
Feature geometry.
* Description source
ESRI
* Description of values
Coordinates defining the features.




Field List_order
* Alias List_order
* Data type SmallInteger
* Width 2
* Precision 5
* Scale 0
Field description
Index identifier for the stream


Field Symbol
* Alias Symbol
* Data type String
* Width 100
* Precision 0
* Scale 0
Field description
Includes all streams that contain documented coho presence from 1979 - 2004 by Bill Jong et. al.
List of values
Value Coho Presnece in Stream Confirmed
Description Indicates that the stream was positively identified as having documented coho presence.


Value Coho Presence in Stream Not Confirmed
Description Dispite literature reviews and field surveys coho could not be confirmed as being present in this stream from 1979 through 2004.


Value Coho Presence in Stream Implied due to presence in tributary
Description Coho presence by implication due to presence in one or more tributaries




Field Shape.STLength()
* Alias Shape.STLength()
* Data type Double
* Width 0
* Precision 0
* Scale 0






Details for object California_Coho_Status_Review_Brood_Year_Investigation_Data
* Row count 26180
* Type Table
Definition
Coho Stream List and Brood year data for California
Definition source
Bill Jong


Field OID
* Alias OID
* Data type OID
* Width 4
* Precision 0
* Scale 0
* Field description
Internal feature number.
* Description source
ESRI
* Description of values
Sequential unique whole numbers that are automatically generated.




Field Stream
* Alias Stream
* Data type String
* Width 254
Field description
Name for each survey stream. Capitalized streams are Brown and Moyle (1991) streams. Aliases also listed in this field.


Field BroodYear
* Alias BroodYear
* Data type Number
* Width 4
Field description
Brood year
List of values
Value Values range from 1979 through 2004
Description Represents brood year. Some data are available for years prior to 1979. These data are represented by '<1979' in the BroodYear column.


Beginning date of values <1979
Ending date of values 2004




Field Presence
* Alias Presence
* Data type String
* Width 100
Field description
Brood year presence documentation indicator.
List of values
Value --
Description No documentation was acquired which would confirm coho salmon presence, i.e. No Data.


Value U
Description Unconfirmed presence: Used when sampling was documented but coho salmon presence was not confirmed.


Value Y
Description Yes present: Presence of coho salmon was confirmed.


Value Yi
Description Yes preseny by implication: Coho salmon was present by implication. Used when coho were confirmed present upstream. The 'Yi' overrides a null or a 'U' if a 'Y' was assigned to an upstream tributary.




Field BM_List
* Alias BM_List
* Data type String
* Width 3
Field description
Identifies streams previously identified as coho streams
List of values
Value Yes
Description Identified by Brown and Moyle as a possible coho stream


Value No
Description Not identified by Brown and Moyle as a coho stream




Field Researched
* Alias Researched
* Data type String
* Width 3
Field description
All streams in this list were thoroughly researched for coho presence
List of values
Value No
Description The stream was added to those identified by Brown and Moyle as coho streams.




Field List_order
* Alias List_order
* Data type Number
* Width 4
Field description
Index identifier for the stream


Field Rec_order
* Alias Rec_Order
* Data type Integer
* Width 9
* Precision 9
* Scale 0
Field description
Unique identifier for the brood year


Field Jong_list
* Alias Jong_List
* Data type String
* Width 20
* Precision 0
* Scale 0
Field description
Includes all streams that contain documented coho presence from 1979 - 2004 by Bill Jong et. al.
List of values
Value Yes
Description Indicates that the stream was positively identified as having documented coho presence.


Value No
Description Dispite literature reviews and field surveys coho could not be confirmed as being present in this stream from 1979 through 2004.


Value Yes-Implied
Description Coho presence by implication due to presence in one or more tributaries


Value Yes*
Description No brood year investigation records present to support coho presence determination in the stream. Contact Bill Jong for clarification.




Field StreamID
* Alias StreamID
* Data type String
* Width 20
Field description
Corresponds to StreamID value found in "Status of Coho Salmon (Oncorhynchus kisutch) in California as Measured by Changes in Temporal and Spatial Historic Occurrence" by Bill Jong c.2006-2008 tables and figures, also stream labels in Map Atlas portion.




References

Aggregate Information
Association type larger work citation


Aggregate resource name
Title Coho Status Review Database
Publication date
Indeterminate date inapplicable


Responsible party
Organization's name Bill Jong, California Dept. of Fish and Game
Contact's role originator




Metadata Details

Metadata language English(UNITED STATES)
Metadata character set utf8 - 8 bit UCS Transfer Format


Scope of the data described by the metadata dataset
Scope name * dataset


* Last update 2014-04-28


ArcGIS metadata properties
Metadata format ArcGIS1.0
Metadata style FGDC CSDGM Metadata


Created in ArcGIS for the item 2014-03-0616:24:54
Last modified in ArcGIS for the item 2014-04-2811:52:33


Automatic updates
Have been performed Yes
Last update 2014-04-2811:52:33


Metadata Contacts

Metadata contact
Individual's name Connie Shannon
Organization's name PSMFC
Contact's position Fisheries Data Management Specialist
Contact's role point of contact


Contact information
Phone
Voice 530-225-2155
Fax 530-225-2267

Address
Type both
Delivery point 2440 Athens Ave.
Delivery point CA Dept. of Fish and Game
City Redding
Administrative area CA
Postal code 96001
e-mail address cshannon@dfg.ca.gov



Thumbnail and Enclosures

Thumbnail

Enclosure
Enclosure type File
Description of enclosure original metadata
Original metadata document, which was translated yes
Source metadata format fgdc