Small Terrestrial Vertebrates - San Diego Co. [ds90]

File Geodatabase Feature Class

Open this dataset in BIOS

Tags
MSCP, pitfall trapping, California, MSCP, baseline data, population trend, amphibian, compliance, reptile, environment, biota, monitoring, small mammal, San Diego County


Summary

The primary purpose of this dataset is for use in developing a species conservation plan for reptiles and amphibians in the Multiple Species Conservation Plan (MSCP) of San Diego, California.

Description

Pitfall sampling for small vertebrates in San Diego County conducted by the USGS as part of the Multiple Species Conservation Plan (MSCP). The dataset contains spatial and temporal information on animal captures. Dataset includes capture records from April 1995 to May 2004. Accuracy of individual data fields have been reviewed and data collection efforts are ongoing. METHODS Array Design: The array design consists of three 15-meter arms of drift fence with 7 pitfall traps and 3 funnel traps. One pitfall trap is placed in the center of the array with each of the 3 arms of drift fence extending outward from the center trap. The angle formed by the array arms around the center trap can vary but should be approximately 120 degrees. Pitfall traps are placed in the middle and at the end of each arm of fencing. One funnel trap is placed along each arm approximately halfway between the middle and end pitfall traps on the right side of each arm when looking from the center trap toward the end trap. The funnel traps are placed consistently on the same side of the fence of each array to ensure that funnel trapping results are comparable from array to array. Trap Labeling/Numbering: For identification purposes, each array at a given study site is assigned a number. Each array arm is assigned a number 1, 2, and 3 in a clockwise direction beginning with the arm arbitrarily designated as arm number 1 (usually the arm first encountered on the trail is assigned the number 1). The pitfall containers are labeled A, B, and C for outer, middle, and center buckets, respectively. All of the traps making up an array are first identified by the number of the array followed by the number of the arm along which the container lies. For example, the middle container of arm three, at array five, would be identified as 5-3B. The center container of array five would be identified as simply 5-C. The funnel traps are identified by the arm number along which they lay, 1-3. For example, the funnel trap located along arm two of array five would be identified as 5-2S. Survey Methods: In our protocol, traps at any given study site are sampled for 4 consecutive days and then closed (i.e., opened on Monday, sampled daily Tuesday through Friday, closed Friday). This is referred to as a sample period. Sample periods are scheduled every 4 to 5 weeks for a given site, resulting in 10 to 12 sample periods a year. This sampling schedule allows for the collection of target information, including seasonal activity patterns of reptiles and amphibians. Based on our analysis of species accumulation curves, it is recommended that a site be sampled 3 to 5 consecutive years to increase the probability of detecting rare species. But this also depends upon the number of trapping arrays at any chosen site. We usually place arrays in multiple representative habitats within a site and include replicates within habitat types as funding permits.

Credits

Use limitations

Disclaimer: The State makes no claims, promises, or guarantees about the accuracy, completeness, reliability, or adequacy of these data and expressly disclaims liability for errors and omissions in these data. No warranty of any kind, implied, expressed, or statutory, including but not limited to the warranties of non-infringement of third party rights, title, merchantability, fitness for a particular purpose, and freedom from computer virus, is given with respect to these data.

Use restricted to government agencies. Positional accuracy of individual locations is limited by: accuracy of satellite GPS locations, observer error, and possible data entry errors. Although, all reasonable attempts have been made to limit these factors, positional accuracy for any individual point should not necessarily be considered minimal. The appropriateness of multiple scales of inference, is the end-users responsibility to justify and the originators assume no responsibility for incorrect or misleading uses of this data

Extent

West -117.271147 East -116.742550
North 33.109000 South 32.525386

Scale Range
Maximum (zoomed in) 1:5,000
Minimum (zoomed out) 1:150,000,000

ArcGIS Metadata

Topics and Keywords

Themes or categories of the resource environment, biota


* Content type Downloadable Data
Export to FGDC CSDGM XML format as Resource Description No

Place keywords California, MSCP, San Diego County

Theme keywords MSCP, pitfall trapping, baseline data, population trend, amphibian, compliance, reptile, monitoring, small mammal

Citation

Title Small Terrestrial Vertebrates - San Diego Co. [ds90]
Publication date 2005-01-0100:00:00


Presentation formats * digital map


Citation Contacts

Responsible party
Organization's name USGS-BRD-WERC San Diego Field Station
Contact's role originator


Resource Details

Dataset languages English(UNITED STATES)
Dataset character set utf8 - 8 bit UCS Transfer Format


Status completed
Spatial representation type * vector


* Processing environment Microsoft Windows 10 Version 10.0 (Build 19042) ; Esri ArcGIS 12.6.0.24783


ArcGIS item properties
* Name ds90
* Size 0.006
* Location file://\\geodata.\bios\WorkArea\BIOSOnline\Refresh\TODOData\BIOSOnlineData.gdb
* Access protocol Local Area Network

Extents

Extent
Description
ground condition
Temporal extent
Beginning date 1995-01-01
Ending date 2004-01-01

Extent
Geographic extent
Bounding rectangle
Extent type Extent used for searching
* West longitude -117.271147
* East longitude -116.742550
* North latitude 33.109000
* South latitude 32.525386
* Extent contains the resource Yes

Extent in the item's coordinate system
* West longitude 256729.599773
* East longitude 304324.623818
* South latitude -604393.974336
* North latitude -541225.300357
* Extent contains the resource Yes

Resource Points of Contact

Point of contact
Individual's name Robert Fisher
Organization's name US Geological Survey - Biological Resources Discipline, Western Ecological Research Center
Contact's position Research Zoologist
Contact's role point of contact


Contact information
Phone
Voice 858-637-6882
Fax 858-974-3563

Address
Type both
Delivery point 5745 Kearny Villa Road, Suite M
City San Diego
Administrative area Ca
Postal code 92123
Country US
e-mail address rfisher@usgs.gov

Hours of service
8-5


Resource Maintenance

Resource maintenance
Update frequency not planned


Resource Constraints

Legal constraints
Limitations of use
The USGS Western Ecological Research Center and its research partners make every effort to provide and maintain accurate, complete, usable, and timely information. However, some USGS data and information may, of necessity, be preliminary in nature. These data and information are provided with the understanding that they are not guaranteed to be correct or complete. Users are cautioned to consider carefully the provisional nature of these data and information before using them for decisions that concern personal or public safety or the conduct of business that involves substantial monetary or operational consequences. It is also strongly recommended that careful attention be paid to the contents of the metadata file associated with these data and information. Conclusions drawn from, or actions undertaken on the basis of, such data and information are the sole responsibility of the user
Other constraints
Access restricted to government agencies. Restrictions and legal prerequisites for accessing the data set apply.
Constraints
Limitations of use

Disclaimer: The State makes no claims, promises, or guarantees about the accuracy, completeness, reliability, or adequacy of these data and expressly disclaims liability for errors and omissions in these data. No warranty of any kind, implied, expressed, or statutory, including but not limited to the warranties of non-infringement of third party rights, title, merchantability, fitness for a particular purpose, and freedom from computer virus, is given with respect to these data.

Use restricted to government agencies. Positional accuracy of individual locations is limited by: accuracy of satellite GPS locations, observer error, and possible data entry errors. Although, all reasonable attempts have been made to limit these factors, positional accuracy for any individual point should not necessarily be considered minimal. The appropriateness of multiple scales of inference, is the end-users responsibility to justify and the originators assume no responsibility for incorrect or misleading uses of this data


Spatial Reference

ArcGIS coordinate system
* Type Projected
* Geographic coordinate reference GCS_North_American_1983
* Projection NAD_1983_California_Teale_Albers
* Coordinate reference details
Projected coordinate system
Well-known identifier 3310
X origin -16909700
Y origin -8597000
XY scale 10000
Z origin -100000
Z scale 10000
M origin -100000
M scale 10000
XY tolerance 0.001
Z tolerance 0.001
M tolerance 0.001
High precision true
Latest well-known identifier 3310
Well-known text PROJCS["NAD_1983_California_Teale_Albers",GEOGCS["GCS_North_American_1983",DATUM["D_North_American_1983",SPHEROID["GRS_1980",6378137.0,298.257222101]],PRIMEM["Greenwich",0.0],UNIT["Degree",0.0174532925199433]],PROJECTION["Albers"],PARAMETER["False_Easting",0.0],PARAMETER["False_Northing",-4000000.0],PARAMETER["Central_Meridian",-120.0],PARAMETER["Standard_Parallel_1",34.0],PARAMETER["Standard_Parallel_2",40.5],PARAMETER["Latitude_Of_Origin",0.0],UNIT["Meter",1.0],AUTHORITY["EPSG",3310]]

Reference system identifier
* Value 3310
* Codespace EPSG
* Version 6.8(9.2.0)


Spatial Data Properties

Vector
* Level of topology for this dataset geometry only


Geometric objects
Feature class name ds90
* Object type point
* Object count 0



ArcGIS Feature Class Properties
Feature class name ds90
* Feature type Simple
* Geometry type Point
* Has topology FALSE
* Feature count 0
* Spatial index TRUE
* Linear referencing FALSE



Data Quality

Scope of quality information
Resource level dataset




Data quality report - Conceptual consistency
Measure description
Locations complete for all verifiable GPS fixes.




Data quality report - Completeness omission
Measure description
Data was populated for all fields applicable for the type of species captured. In some cases where the animal escaped, not all data was collected.




Data quality report - Quantitative attribute accuracy
Measure description
Attributes assigned by field personnel, accuracy of attribute information subject to error in data entry or interpretation. Incidence and degree of errors presumed to be small. In certain instances, some attribute data were not recorded.




Data quality report - Absolute external positional accuracy
Dimension horizontal


Measure description
Spatial locations determined by GPS fixes. Errors in positional GPS locations minor but may exceed 50 meters.




Geoprocessing history

Process
Process name DefineProjection_2
Date 2005-03-2109:47:41
Tool location C:\Program Files\ArcGIS\ArcToolbox\Toolboxes\Data Management Tools.tbx\DefineProjection
Command issued
Include in lineage when exporting metadata No


Process
Process name Project_4
Date 2005-03-2110:17:22
Tool location C:\Program Files\ArcGIS\ArcToolbox\Toolboxes\Data Management Tools.tbx\Project
Command issued
Include in lineage when exporting metadata No


Process
Process name
Date 2007-07-1311:37:22
Tool location C:\Program Files\ArcGIS\ArcToolbox\Toolboxes\Data Management Tools.tbx\CopyFeatures
Command issued
Include in lineage when exporting metadata No


Process
Process name
Date 2021-05-1411:19:16
Tool location c:\program files (x86)\arcgis\desktop10.5\ArcToolbox\Toolboxes\Conversion Tools.tbx\FeatureClassToFeatureClass
Command issued
Include in lineage when exporting metadata No


Process
Date 2021-06-0812:55:55
Tool location c:\program files\arcgis\pro\Resources\ArcToolbox\toolboxes\Conversion Tools.tbx\FeatureClassToFeatureClass
Command issued
Include in lineage when exporting metadata No


Process
Date 2021-06-0812:56:08
Tool location c:\program files\arcgis\pro\Resources\ArcToolbox\toolboxes\Data Management Tools.tbx\Project
Command issued
Include in lineage when exporting metadata No


Process
Date 2021-06-0812:56:12
Tool location c:\program files\arcgis\pro\Resources\ArcToolbox\toolboxes\Data Management Tools.tbx\Rename
Command issued
Include in lineage when exporting metadata No


Distribution

Distribution format
* Name File Geodatabase Feature Class


Transfer options
* Transfer size 0.006


Online source
Location https://wildlife.ca.gov/Data/BIOS
Function performed information

Fields

Details for object ds90
* Type Feature Class
* Row count 0


Field SHAPE
* Alias Shape
* Data type Geometry
* Width 0
* Precision 0
* Scale 0
* Field description
Feature geometry.
* Description source
ESRI
* Description of values
Coordinates defining the features.




Field LONGITUDE
* Alias OBJECTID
* Data type OID
* Width 4
* Precision 0
* Scale 0
Field description
DDD.DDD Decimal degree
Description source
USGS
* Description of values
Coordinates defining the features.


Accuracy information
Accuracy 99% of records +/- 50 m
Explanation
limited by accuracy of satellite GPS locations


Field Shape
* Alias ARRAYID
* Data type String
* Width 8
* Precision 0
* Scale 0
* Field description
Feature geometry.
* Description source
ESRI
* Description of values
Coordinates defining the features.




Field ARRAYID
* Alias SITE_NAME
* Data type String
* Width 34
* Precision 0
* Scale 0
Field description
Unique individual identifier for study plot within a study site.
Description source
USGS
Accuracy information
Accuracy 99%
Explanation
Selected entry by field personnel


Field SITE_NAME
* Alias LATITUDE
* Data type Double
* Width 8
* Precision 0
* Scale 0
Field description
Descriptive text name for a study site
Description source
USGS


Field LATITUDE
* Alias LONGITUDE
* Data type Double
* Width 8
* Precision 0
* Scale 0
Field description
DDD.DDD Decimal degree
Description source
USGS
Accuracy information
Accuracy 99% of records +/- 50 m
Explanation
limited by accuracy of satellite GPS locations




Details for object ds90EX1_20050322
* Type Table
* Row count 36248


Field OBJECTID
* Alias OBJECTID
* Data type OID
* Width 4
* Precision 0
* Scale 0
* Field description
Internal feature number.
* Description source
ESRI
* Description of values
Sequential unique whole numbers that are automatically generated.




Field SCIENTIFIC
* Alias SCIENTIFIC
* Data type String
* Width 8
Field description
Scientific name of the individual captured animal
Description source
USGS
Accuracy information
Accuracy 99%
Explanation
Selected entry by field personnel


Field COMMONNAME
* Alias COMMONNAME
* Data type String
* Width 8
Field description
Common name of the individual captured animal
Description source
USGS
Accuracy information
Accuracy 99%
Explanation
Selected entry by field personnel


Field DATE_
* Alias DATE1
* Data type String
* Width 34
Field description
Date animal processed
Description source
USGS


Field BUCKET
* Alias BUCKET
* Data type Number
* Width 14
* Number of decimals 5
Field description
Trap identification information for the recorded animal
Description source
USGS
List of values
Value 1A
Description Outside pitfall trap along arm 1
Enumerated domain value definition source USGS


Value 1B
Description Middle pitfall trap along arm 1
Enumerated domain value definition source USGS


Value 2A
Description Outside pitfall trap along arm 2
Enumerated domain value definition source USGS


Value 2B
Description Middle pitfall trap along arm 2
Enumerated domain value definition source USGS


Value 3A
Description outside pitfall trap along arm 3
Enumerated domain value definition source USGS


Value 3B
Description Middle pitfall trap along arm 3
Enumerated domain value definition source USGS


Value C
Description Center pitfall trap
Enumerated domain value definition source USGS


Value CB1
Description Coverboard along arm 1
Enumerated domain value definition source USGS


Value CB2
Description Coverboard along arm 2
Enumerated domain value definition source USGS


Value CB3
Description Coverboard along arm 3
Enumerated domain value definition source USGS


Value ST1
Description Snaketrap along arm 1
Enumerated domain value definition source USGS


Value ST2
Description Snaketrap along arm 2
Enumerated domain value definition source USGS


Value ST3
Description Snaketrap along arm 3
Enumerated domain value definition source USGS


Value ST1A
Description Snaketrap along arm 1, between pitfall trap 1A and 1B
Enumerated domain value definition source USGS


Value ST1B
Description Snaketrap along arm 1, between pitfall trap 1B and C


Value ST2A
Description Snaketrap along arm 2, between pitfall trap 2A and 2B
Enumerated domain value definition source USGS


Value ST2B
Description Snaketrap along arm 2, between pitfall trap 2B and C
Enumerated domain value definition source USGS


Value ST3A
Description Snaketrap along arm 3, between pitfall trap 3A and 3B
Enumerated domain value definition source USGS


Value ST3B
Description Snaketrap along arm 3, between pitfall trap 3B and C
Enumerated domain value definition source USGS


Value X
Description Unknown, indecipherable value (incorrect entry, invalid value)
Enumerated domain value definition source USGS


Accuracy information
Accuracy 99%
Explanation
Selected entry by field personnel


Field SEX
* Alias SEX
* Data type Number
* Width 16
* Number of decimals 5
Field description
Gender of the individual animal
Description source
USGS
List of values
Value 1
Description "blank"
Enumerated domain value definition source USGS


Value 2
Description Male
Enumerated domain value definition source USGS


Value 3
Description Female
Enumerated domain value definition source USGS


Value 4
Description Unknown
Enumerated domain value definition source USGS


Value 5
Description A (adult, incorrect entry, invalid value)
Enumerated domain value definition source USGS


Accuracy information
Accuracy 95%
Explanation
Selected entry by field personnel


Field AGE
* Alias AGE
* Data type String
* Width 9
Field description
Age of the individual animal
Description source
USGS
List of values
Value 1
Description "Blank"
Enumerated domain value definition source USGS


Value 2
Description Adult
Enumerated domain value definition source USGS


Value 3
Description Juvenile
Enumerated domain value definition source USGS


Value 4
Description Unknown
Enumerated domain value definition source USGS


Value 5
Description F (Female, incorrect entry, invalid value)
Enumerated domain value definition source USGS


Accuracy information
Accuracy 95%
Explanation
Selected entry by field personnel


Field WTG
* Alias WTG
* Data type Number
* Width 9
Field description
Weight, in grams, of the individual animal captured
Description source
USGS
Accuracy information
Accuracy 95%
Explanation
Selected entry by field personnel


Field LNMM
* Alias LNMM
* Data type Number
* Width 9
Field description
Length, in millimeters, of the individual animal captured
Description source
USGS
Accuracy information
Accuracy 95%
Explanation
Selected entry by field personnel


Field TOECLIP
* Alias TOECLIP
* Data type Number
* Width 9
Field description
Identification number of the individual animal captured
Description source
USGS
Accuracy information
Accuracy 95%
Explanation
Selected entry by field personnel


Field RECAP
* Alias RECAP
* Data type Number
* Width 9
Field description
Recapture status of the individual animal
Description source
USGS
List of values
Value 1
Description "Blank"
Enumerated domain value definition source USGS


Value 2
Description Y (yes)
Enumerated domain value definition source USGS


Value 3
Description N (No)
Enumerated domain value definition source USGS


Value 4
Description Unknown or ?
Enumerated domain value definition source USGS


Accuracy information
Accuracy 99%
Explanation
Selected entry by field personnel


Field DISPOSITIO
* Alias DISPOSITION
* Data type Number
* Width 10
Description source
USGS
Field description
Final condition of the animal
List of values
Value 1
Description "Blank"
Enumerated domain value definition source USGS


Value 2
Description R (Released)
Enumerated domain value definition source USGS


Value 3
Description D (Dead)
Enumerated domain value definition source USGS


Value 4
Description E (Escape)
Enumerated domain value definition source USGS


Value 5
Description Y (Yes, an incorrect entry, invalid value)
Enumerated domain value definition source USGS


Value 6
Description P (an incorrect entry, invalid value)
Enumerated domain value definition source USGS


Value 7
Description Other (text value, an incorrect entry, invalid value)
Enumerated domain value definition source USGS


Value 8
Description N (No, an incorrect entry, invalid value)
Enumerated domain value definition source USGS


Value 9
Description F (Female, an incorrect entry, invalid value)
Enumerated domain value definition source USGS


Accuracy information
Accuracy 99%
Explanation
Selected entry by field personnel


Field TISSUE
* Alias TISSUE
* Data type String
* Width 9
Field description
A Tissue sample was collected from the individual animal
Description source
USGS
List of values
Value 1
Description "Blank"
Enumerated domain value definition source USGS


Value 2
Description Y (yes)
Enumerated domain value definition source USGS


Value 3
Description N (No)
Enumerated domain value definition source USGS


Value 4
Description D (Dead, incorrect entry, invalid value)
Enumerated domain value definition source USGS


Value 5
Description R (Released, incorrect entry, invalid value)
Enumerated domain value definition source USGS


Accuracy information
Accuracy 99%
Explanation
Selected entry by field personnel


Field SURVEYID
* Alias SURVEYID
* Data type String
* Width 9
Field description
Unique identifier for sampling effort
Description source
USGS


Field SITEID
* Alias SITEID
* Data type String
* Width 9
Field description
Unique individual identifier code for a study site
Description source
USGS
List of values
Value CAR
Description Carmel Mountain
Enumerated domain value definition source USGS


Value CED
Description Little Cedar Ridge
Enumerated domain value definition source USGS


Value CRE
Description La Cresta
Enumerated domain value definition source USGS


Value CV1
Description Chula Vista 1
Enumerated domain value definition source USGS


Value CV2
Description Chula Vista 2
Enumerated domain value definition source USGS


Value DMM
Description Del Mar Mesa
Enumerated domain value definition source USGS


Value Ell
Description Elliott Reserve
Enumerated domain value definition source USGS


Value HOL
Description Hollenbeck Canyon Wildlife Area
Enumerated domain value definition source USGS


Value LOM
Description Point Loma
Enumerated domain value definition source USGS


Value MAR
Description Marron Valley
Enumerated domain value definition source USGS


Value MIS
Description Mission Trails
Enumerated domain value definition source USGS


Value NTP
Description New Torrey Pines
Enumerated domain value definition source USGS


Value RAJ
Description Rancho Jamul
Enumerated domain value definition source USGS


Value SPR
Description Spring Canyon
Enumerated domain value definition source USGS


Value SWT
Description San Diego National Wildlife Refuge
Enumerated domain value definition source USGS


Value T J E
Description Tijuana Estuary
Enumerated domain value definition source USGS


Value TP1
Description Torrey Pines 1
Enumerated domain value definition source USGS


Value TP2
Description Torrey Pines 2
Enumerated domain value definition source USGS


Value TP3
Description Torrey Pines 3
Enumerated domain value definition source USGS


Value WAP
Description Wild Animal Park
Enumerated domain value definition source USGS




Field ARRAYID
* Alias ARRAYID
* Data type String
* Width 8
Field description
Unique individual identifier for study plot within a study site.
Description source
USGS
Accuracy information
Accuracy 99%
Explanation
Selected entry by field personnel




Metadata Details

Metadata language English(UNITED STATES)
Metadata character set utf8 - 8 bit UCS Transfer Format


Scope of the data described by the metadata dataset
Scope name * dataset


* Last update 2021-06-08


ArcGIS metadata properties
Metadata format ArcGIS1.0
Standard or profile used to edit metadata FGDC


Created in ArcGIS for the item 2021-06-0812:56:07
Last modified in ArcGIS for the item 2021-06-0812:55:54


Automatic updates
Have been performed Yes
Last update 2021-06-0812:55:54


Metadata Contacts

Metadata contact
Individual's name Carlton Rochester
Organization's name US Geological Survey - Biological Resources Discipline - Western Ecological Research Center
Contact's position Biologist
Contact's role point of contact


Contact information
Phone
Voice 858-637-6884
Fax 858-974-3563

Address
Type both
Delivery point 5745 Kearny Villa Road, Suite M
City San Diego
Administrative area Ca
Postal code 92123
Country US
e-mail address crochester@usgs.gov

Hours of service
8-5


Metadata Maintenance

Maintenance
Update frequency not planned


Thumbnail and Enclosures