Kelp UAV Surveys - Sonoma County - 2021 [ds3110]

File Geodatabase Feature Class

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Tags
The Nature Conservancy, University of California Los Angeles, Northern California, Kelp, Classification, Remote Sensing, Unoccupied Aerial Vehicles, UAV, Sonoma County


Summary

This dataset was processed by The University of California, Los Angeles (UCLA) and The Nature Conservancy, California (TNC) and is used to assess emergent kelp canopy area at priority sites, established by the Sonoma-Mendocino Bull Kelp Recovery Plan (1), along the North Coast of California. Data were collected by unoccupied aerial vehicle (UAV) pilots for the Greater Farallones Association. This is a simplified and lower resolution version of the data for quicker visualization and should not be used for analysis. The higher resolution data will be downloaded in tandem with this version in BIOS.

Description

This dataset derived from mosaicked RGB imagery, targeting only exposed kelp in priority sites along the California coastline in Sonoma County. The imagery was acquired using DJI Phantom, Matrice, and Mavic series UAVs with the standard RGB sensor; sensor resolution ranged from 12.4 - 20.8 megapixels. The ground sampling distance ranged from 2.5-3.8 cm. Pilots aimed for 75-80% front/side overlap at 400ft (120m) altitude. Flights were coordinated to coincide with annual, peak biomass of Nereocystis luetkeana and the lowest tide of the month as tidal height and surface currents have been shown to impact the amount of kelp canopy exposed on the water surface (2), and these impacts can vary regionally (3). Imagery was mosaicked using a standard mapping software (i.e. DroneDeploy, Pix4D, and PhotoScan).

Kelp pixels were identified in each UAV image using a band combination between the red and blue bands (Red - Blue), as Red - Blue has been shown to best distinguish kelp from water in RGB-UAV imagery relative to other RGB vegetation indices (3). Before applying a threshold to an image, all terrestrial objects (land, intertidal rocks) were manually masked. Due to radiometric and spectral variability present in the imagery, thresholds to distinguish kelp from water were selected manually by expert classifiers. For images with high levels of spectral variability due to turbidity, sun glint, or other artifacts, a single threshold could not be used for kelp identification, as the threshold varied throughout the image. These images were gridded into subsets (ranging from 1000 x 1000 m areas to 5000 x 5000 m areas, depending on the level of variability), and each grid was assigned a unique threshold. The classified grids were mosaicked back to their original extent. All final classification mosaics were manually edited to increase accuracy. Classifications values were binary (Kelp or No Kelp) with the exception of mixed-species marine algal beds and the occasional blurred image, which were assigned No Data values. The classification process yields three levels: kelp, no kelp, and no data (when applicable), where no data denotes areas where it was not possible to confirm the presence/absence of kelp.

The imagery for these sites was collected between September 12 - September 20, 2021. The date of imagery collection, UAV launch, and UAV land times for each site are included below:

Site

Date

LaunchTime

LandTime

Sonoma Timber Cove South (STCS)

20210913

11:25 AM

11:50 AM

Sonoma Timber Cove North (STCN)

20210913

2:26 PM

3:11 PM

Sonoma Timber Cove Rosson (STCR)

20210913

11:14 AM

11:25 AM

Sonoma Sea Ranch South (SSRS)

20210920

10:49 AM

12:15 PM

Sonoma Sea Ranch North (SSRN)

20210920

8:16 AM

9:38 AM

Sonoma Ocean Cove (SOC)

20210910

1:51 PM

2:47 PM

Sonoma Fort Ross (SFR)

20210912

3:12 PM

4:05 PM

Sonoma Del Mar (SDM)

20210920

4:37 PM

5:20 PM

Attributes:

  • SurveyID: priority site surveyed by UAV. Sites were established by the Sonoma-Mendocino Bull Kelp Recovery Plan (1) .

  • Type: denotes whether a pixel was classified as kelp or no data, as well as the extent of the UAV survey (i.e. Survey Extent). Pixels within the survey extent classified as No Data were visually obstructed (e.g. by sun glint) and were unable to be classified. Pixels within the surv ey extent not classified as Kelp nor No Data are by default not kelp pixels (e.g. open water, coastal rocks, etc.).

Credits

TNC, UCLA, and GFA must be credited with the distribution of these data. Suggested citation: The Nature Conservancy, University of California, Los Angeles, and Greater Farallones Association. (2021). Emergent kelp canopy pixel classifications of North Coast priority kelp forest sites. https://apps.wildlife.ca.gov/bios6/ Contacts: University of California, Los Angeles: Dr. Kyle Cavanaugh, kcavanaugh@geog.ucla.edu The Nature Conservancy, California: Vienna Saccomanno, v.r.saccomanno@tnc.org (1) Hohman, R., Hutto, S., Catton, C. and F. Koe. 2019. Sonoma-Mendocino Bull Kelp Recovery Plan. Plan for the Greater Farallones National Marine Sanctuary and the California Department of Fish and Wildlife. San Francisco, CA. 166 (2) Britton-Simmons, K., Eckman, J. E. and Duggins, D. O. Effect of tidal currents and tidal stage on estimates of bed size in the kelp Nereocystis luetkeana. Marine Ecology Progress Series vol. 355 95-105 (2008) (3) Cavanaugh, K. C., Cavanaugh, K. C., Bell, T. W., and Hockridge, E. G. (2021). An Automated Method for Mapping Giant Kelp Canopy Dynamics from UAV. Front. Environ. Sci, 8, 587354.

Use limitations

This is a simplified and lower resolution version of the data for quicker visualization and should not be used for analysis. The higher resolution data will be downloaded in tandem with this version in BIOS.

DISCLAIMER: (1) Timing of the survey is important, particularly with respect to peak kelp biomass, conditions in the ocean (e.g. tides and currents), and storms. Seasonal variability may account for differences in surveys which may not reflect a change in the kelp bed's extent or productivity. (2) Statistical significance in change of area should be evaluated. (3) Survey sensors across time and space may not be consistent. (4) Because wind and weather conditions varied significantly throughout the data collection process, surveys were not restricted to a specific tidal height or current speed - and data were collected when field conditions allowed for stable UAV launch and landing. While this limitation may introduce bias into area estimates, these data still inform the location of kelp canopy on fine spatial scales.

Disclaimer: The State makes no claims, promises, or guarantees about the accuracy, completeness, reliability, or adequacy of these data and expressly disclaims liability for errors and omissions in these data. No warranty of any kind, implied, expressed, or statutory, including but not limited to the warranties of non-infringement of third party rights, title, merchantability, fitness for a particular purpose, and freedom from computer virus, is given with respect to these data.

Extent

West -123.596050 East -123.258448
North 38.815367 South 38.507342

Scale Range
Maximum (zoomed in) 1:5,000
Minimum (zoomed out) 1:150,000,000

ArcGIS Metadata

Topics and Keywords

Themes or categories of the resource biota, boundaries


* Content type Downloadable Data
Export to FGDC CSDGM XML format as Resource Description No

Place keywords Sonoma County

Theme keywords The Nature Conservancy, University of California Los Angeles, Northern California, Kelp, Classification, Remote Sensing, Unoccupied Aerial Vehicles, UAV

Citation

Title Kelp UAV Surveys - Sonoma County - 2021 [ds3110]
Publication date 2023-06-2300:00:00


Presentation formats * digital map


Citation Contacts

Responsible party
Individual's name Vienna Saccomanno
Organization's name The Nature Conservancy, California
Contact's position Senior Ocean Scientist
Contact's role point of contact


Contact information


Resource Details

Dataset languages * English(UNITED STATES)
Dataset character set utf8 - 8 bit UCS Transfer Format


Status completed
Spatial representation type * vector


* Processing environment Microsoft Windows 10 Version 10.0 (Build 19045) ; Esri ArcGIS 13.1.0.41833


Credits
TNC, UCLA, and GFA must be credited with the distribution of these data. Suggested citation: The Nature Conservancy, University of California, Los Angeles, and Greater Farallones Association. (2021). Emergent kelp canopy pixel classifications of North Coast priority kelp forest sites. https://apps.wildlife.ca.gov/bios6/ Contacts: University of California, Los Angeles: Dr. Kyle Cavanaugh, kcavanaugh@geog.ucla.edu The Nature Conservancy, California: Vienna Saccomanno, v.r.saccomanno@tnc.org (1) Hohman, R., Hutto, S., Catton, C. and F. Koe. 2019. Sonoma-Mendocino Bull Kelp Recovery Plan. Plan for the Greater Farallones National Marine Sanctuary and the California Department of Fish and Wildlife. San Francisco, CA. 166 (2) Britton-Simmons, K., Eckman, J. E. and Duggins, D. O. Effect of tidal currents and tidal stage on estimates of bed size in the kelp Nereocystis luetkeana. Marine Ecology Progress Series vol. 355 95-105 (2008) (3) Cavanaugh, K. C., Cavanaugh, K. C., Bell, T. W., and Hockridge, E. G. (2021). An Automated Method for Mapping Giant Kelp Canopy Dynamics from UAV. Front. Environ. Sci, 8, 587354.
ArcGIS item properties
* Name ds3110
* Size 0.000
* Location file://\\geodata.\\BIOSOnline\Refresh\TODOData\BIOSOnlineData.gdb
* Access protocol Local Area Network

Extents

Extent
Vertical extent
* Minimum value 0.000000
* Maximum value 0.000000


Extent
Geographic extent
Bounding rectangle
Extent type Extent used for searching
* West longitude -123.596050
* East longitude -123.258448
* North latitude 38.815367
* South latitude 38.507342
* Extent contains the resource Yes

Extent in the item's coordinate system
* West longitude -311892.457000
* East longitude -283730.273300
* South latitude 60470.759500
* North latitude 93713.669000
* Extent contains the resource Yes

Resource Points of Contact

Point of contact
Individual's name Vienna Saccomanno
Organization's name The Nature Conservancy, California
Contact's position Senior Ocean Scientist
Contact's role point of contact


Contact information


Resource Maintenance

Resource maintenance
Update frequency not planned


Resource Constraints

Constraints
Limitations of use

This is a simplified and lower resolution version of the data for quicker visualization and should not be used for analysis. The higher resolution data will be downloaded in tandem with this version in BIOS.

DISCLAIMER: (1) Timing of the survey is important, particularly with respect to peak kelp biomass, conditions in the ocean (e.g. tides and currents), and storms. Seasonal variability may account for differences in surveys which may not reflect a change in the kelp bed's extent or productivity. (2) Statistical significance in change of area should be evaluated. (3) Survey sensors across time and space may not be consistent. (4) Because wind and weather conditions varied significantly throughout the data collection process, surveys were not restricted to a specific tidal height or current speed - and data were collected when field conditions allowed for stable UAV launch and landing. While this limitation may introduce bias into area estimates, these data still inform the location of kelp canopy on fine spatial scales.

Disclaimer: The State makes no claims, promises, or guarantees about the accuracy, completeness, reliability, or adequacy of these data and expressly disclaims liability for errors and omissions in these data. No warranty of any kind, implied, expressed, or statutory, including but not limited to the warranties of non-infringement of third party rights, title, merchantability, fitness for a particular purpose, and freedom from computer virus, is given with respect to these data.


Spatial Reference

ArcGIS coordinate system
* Type Projected
* Geographic coordinate reference GCS_North_American_1983
* Projection NAD_1983_California_Teale_Albers
* Coordinate reference details
Projected coordinate system
Well-known identifier 3310
X origin -16909700
Y origin -8597000
XY scale 10000
Z origin -100000
Z scale 10000
M origin -100000
M scale 10000
XY tolerance 0.001
Z tolerance 0.001
M tolerance 0.001
High precision true
Latest well-known identifier 3310
Well-known text PROJCS["NAD_1983_California_Teale_Albers",GEOGCS["GCS_North_American_1983",DATUM["D_North_American_1983",SPHEROID["GRS_1980",6378137.0,298.257222101]],PRIMEM["Greenwich",0.0],UNIT["Degree",0.0174532925199433]],PROJECTION["Albers"],PARAMETER["False_Easting",0.0],PARAMETER["False_Northing",-4000000.0],PARAMETER["Central_Meridian",-120.0],PARAMETER["Standard_Parallel_1",34.0],PARAMETER["Standard_Parallel_2",40.5],PARAMETER["Latitude_Of_Origin",0.0],UNIT["Meter",1.0],AUTHORITY["EPSG",3310]]

Reference system identifier
* Value 3310
* Codespace EPSG
* Version 6.8(9.2.0)


Spatial Data Properties

Vector
* Level of topology for this dataset geometry only


Geometric objects
Feature class name ds3110
* Object type composite
* Object count 0



ArcGIS Feature Class Properties
Feature class name ds3110
* Feature type Simple
* Geometry type Polygon
* Has topology FALSE
* Feature count 0
* Spatial index TRUE
* Linear referencing TRUE



Geoprocessing history

Process
Date 2024-01-1110:54:11
Tool location c:\program files\arcgis\pro\Resources\ArcToolbox\toolboxes\Conversion Tools.tbx\ExportFeatures
Command issued
Include in lineage when exporting metadata No


Process
Date 2024-01-1110:54:30
Tool location c:\program files\arcgis\pro\Resources\ArcToolbox\toolboxes\Data Management Tools.tbx\Project
Command issued
Include in lineage when exporting metadata No


Process
Date 2024-01-1110:54:53
Tool location c:\program files\arcgis\pro\Resources\ArcToolbox\toolboxes\Data Management Tools.tbx\Rename
Command issued
Include in lineage when exporting metadata No


Distribution

Distribution format
* Name File Geodatabase Feature Class


Transfer options
* Transfer size 0.000


Online source
Location https://wildlife.ca.gov/Data/BIOS
Function performed information

Online source
Location https://filelib.wildlife.ca.gov/Public/BDB/GIS/BIOS/Public_Datasets/3100_3199/ds3110.zip
Function performed download

Fields

Details for object ds3110
* Type Feature Class
* Row count 0


Field OBJECTID
* Alias OBJECTID
* Data type OID
* Width 4
* Precision 0
* Scale 0
* Field description
Internal feature number.
* Description source
Esri
* Description of values
Sequential unique whole numbers that are automatically generated.




Field Shape
* Alias Shape
* Data type Geometry
* Width 0
* Precision 0
* Scale 0
* Field description
Feature geometry.
* Description source
Esri
* Description of values
Coordinates defining the features.




Field type
* Alias type
* Data type String
* Width 254
* Precision 0
* Scale 0
Field description
Denotes whether a pixel was classified as kelp or no data, as well as the extent of the UAV survey (i.e. Survey Extent). Pixels within the survey extent classified as No Data were visually obstructed (e.g. by sun glint) and were unable to be classified. Pixels within the survey extent not classified as Kelp nor No Data are by default not kelp pixels (e.g. open water, coastal rocks, etc.).


Field SurveyID
* Alias SurveyID
* Data type String
* Width 254
* Precision 0
* Scale 0
Field description
Priority site surveyed by UAV. Sites were established by the Sonoma-Mendocino Bull Kelp Recovery Plan (1).


Field Shape_Length
* Alias Shape_Length
* Data type Double
* Width 8
* Precision 0
* Scale 0
* Field description
Length of feature in internal units.
* Description source
Esri
* Description of values
Positive real numbers that are automatically generated.




Field Shape_Area
* Alias Shape_Area
* Data type Double
* Width 8
* Precision 0
* Scale 0
* Field description
Area of feature in internal units squared.
* Description source
Esri
* Description of values
Positive real numbers that are automatically generated.






Metadata Details

* Metadata language English(UNITED STATES)
* Metadata character set utf8 - 8 bit UCS Transfer Format


Scope of the data described by the metadata * dataset
Scope name * dataset


* Last update 2024-01-11


ArcGIS metadata properties
Metadata format ArcGIS1.0
Standard or profile used to edit metadata FGDC


Created in ArcGIS for the item 2024-01-1110:54:20
Last modified in ArcGIS for the item 2024-01-1110:54:07


Automatic updates
Have been performed Yes
Last update 2024-01-1110:54:07


Metadata Contacts

Metadata contact
Individual's name Vienna Saccomanno
Organization's name The Nature Conservancy, California
Contact's position Senior Ocean Scientist
Contact's role point of contact


Contact information


Metadata Maintenance

Maintenance
Update frequency not planned